NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001110

Scaffold Ga0209535_1001110


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001110 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18498
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (40.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F002602Metagenome / Metatranscriptome544Y
F005720Metagenome / Metatranscriptome392Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10011101F005720AGGAGMPATSNATANMCRRQSFNGKGLTFIEMMFDDEMVTTSTTPDTKGSVFNEMSKLVGTFGTIIAQSYALGSKATEKDAAIATSIVEDELCDYYSFIVEGTPGQFNAADSAGDVNLDPNQADASDPGVIADAEADIETEILARITENDSAGGVHVDVRYLPADGVTAAGEEVVYGMNSARVNA
Ga0209535_100111017F002602GGAMTDADQIKALVVAIEEKDQQIRKLLAQQGSDEVQISEYRQIVQELSQKLQNYERLYGTVFKK
Ga0209535_100111026F000379N/AMNKGVEMQKIDYTNKHDIMVGYIDRSQNICAVQTGWKTTPEEMAKILDRKYPTKEDSIKVVDSPVLIPTFRKEDYWGVEGFGDVIESNLSWNKEVMRKKVGHLFCHMTGVWKYSDNGIDWTPIREEFAEEFKEVA
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