Basic Information | |
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Taxon OID | 3300025120 Open in IMG/M |
Scaffold ID | Ga0209535_1001363 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16751 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001205 | Metagenome / Metatranscriptome | 748 | Y |
F002190 | Metagenome / Metatranscriptome | 585 | Y |
F004711 | Metagenome / Metatranscriptome | 427 | Y |
F049287 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209535_100136314 | F002190 | N/A | MSSKLSYYICLVTKNGKTEEYGYGLPYKDIMEAVWEHYDNGADAVLMEMITEEQFNDRLPKPY |
Ga0209535_100136322 | F004711 | AGG | MARIGRKSTLEWIKEDYKSNPKRFCAEVVGMASNVIAALILMWYSPNPPMFIAYIFFLVATCFLMYGAFSRKSFGFTVMYLVYLAIDGIGFIKTML |
Ga0209535_10013635 | F001205 | N/A | MFKDVIGDWPTHDKFILTSCDDKYFDQYFPRFYKTYNEHWQLPIHVHIIDPSDTSMQRLDNLDVTYTHCTTDKSVLRFPYSYETYCQAQRFILLGYNMLENQSVIVADVDSYALRHPNETQRHTLQSDMAFTEYNGRLMATFCNFHHSQRTQARQSAIKMQHLVEQTDTIGVDQLVIKEIFKTLPYNKLKHEEWIRHFDNRTESDAKKHNQCLIYHEKGTRGKLKTVETTWTDIG |
Ga0209535_10013637 | F049287 | N/A | MYKLFATFCFLVNGAVECTDYNDSDEKIYQELAKCEEMAEYRFYGMTDVFTTYQQPYEKIVIGCVEIED |
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