NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1003178

Scaffold Ga0209535_1003178


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1003178 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10520
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011403Metagenome / Metatranscriptome291Y
F067803Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10031784F067803AGGMAIRDSLKANLDVSLASSNVSVSSELPYEASGEPLYLKNMKFVYLDEDNISKTVLLNCLDNNDVIETETTVQVFLAVDAKTLPGDIDTIVANVINSRNSITNQVIRECEMTTETEADVLTYTFDYRFVTVT
Ga0209535_10031785F011403AGGAGMSVINVSAGSEAVLHIAAANAVTANSAVTSLVVPQMQDITINNQVGVFRFKTLDSTAESAVTIPATNQLTLNCVVDQTAFFGTGTPSDDDAKENGLFGLSKNKTQVYFNAYLNGTDSGSVYIRGTGFIAGLSPTVNMDSPVWVTPVSLEISGDIEHDLVP
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