NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1004435

Scaffold Ga0209535_1004435


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1004435 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8737
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F009812Metagenome312Y
F030928Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100443510F000720GAGGMNLIKEDKIVRATIPDRMMSTTFTLPIDDRKVVGIVNYIADINGVTPMAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMANYLHKNMDDIIMGVPTDKKQRMLSTDPYASQMKE
Ga0209535_100443511F009812N/AMEEFEIEWIPESANDCFTEIPAHTIDKLCKAKYGHTNWARMGQMSPEELLGNPCDFDYDNGVIYFKSAHMV
Ga0209535_10044356F003020N/AMLTKGKIMPDISRFKSVSVSMNTHEKLINLAQNRFEVPVSVQKIIEFLLEKEMKKRKNGKTR
Ga0209535_10044357F004988N/AMVKLVETICPRCNGNGYIRVQDVLGEDMMEIDCPMCEEEFMHFGLKVKTYNGYVMLPVEDTRKNIEGGRESKSKWSGETLPEVGKL
Ga0209535_10044359F030928AGGMNNEFKTALEKYINTCILGFAILICLIVIVVNSRYIIKLESTIDTMWHEIEQVKETNISLYQFIEEHENEFD

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