NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1004754

Scaffold Ga0209535_1004754


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1004754 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8435
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011403Metagenome / Metatranscriptome291Y
F011589Metagenome / Metatranscriptome289Y
F067803Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10047545F011589AGGAGMAFIVSGGDVVSYAEALDVRDKDQRVFESNEIDFTDVPDTPGSLNNYLEDLLIKSTSRINQKIRASARWREYLGYAGGGYDSINNIPAFVGAKILSRKSDFTDMCSYHCLKEYILPKIADFGNPESPEVQKIQYYDDKFNDLYTELLDMMDWYDADDDGTVTDGEKQVRFRLNRRTRSRQPVTRVR
Ga0209535_10047546F067803AGGMAIRDNLKANLDVSLAGSNVSVSSELPYSVGGETLYNKNMKYLYIDEDNIEVTELISCLDNNDVNQTETEITGFLSVDAKNQPGDIDTVITSILNSRNAISNQTIRECEMTTENTNDVITYTFNFRFVTV
Ga0209535_10047547F011403AGGAGMAVINVSAGSEAVIMLGDSAANANVATGASDGLLLPQMSDITINNSTGVFRFKTLDNTAESAVTTPATNQITINAVVDSASFFGTGAGSIDTVKDTGVLGVSTSKTRVFFQAAFDGRDTGSKYLSGSGFISGLAPTVNMDSPVWVTPITIEVDGDYTEGAVA
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Institute for Fundamental Biomedical Research
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