NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1006465

Scaffold Ga0209535_1006465


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1006465 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7045
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F003920Metagenome / Metatranscriptome462Y
F049046Metagenome / Metatranscriptome147N
F080233Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100646513F003920N/AMLVRTVILYAVMTVCAVAFHEHTYAVWELREELQIRFMNMWELLDQLKYATAEQRVIVYAEIDHIRAEIQHIIDELIRLDKEQH
Ga0209535_100646514F003169AGGMIKYPLYKKNNSRKNTLLYPGLTTVSFDRIITYMQYYYVLAYMGKHCYRHYVQLDPESADALHDVLVSRYDLVQVCAVKHSDVDPAILIAPAP
Ga0209535_10064652F049046GGAVYSEIQHDLKNLFGVDEVINISNMGGSPDRQIRGVIEWTAQNGKPDMVIVPVSFAHRFELPISERSDPLHNKHYKCLWHMDLGKNYGSNNPIDPKYDRSILETYMKTGAVIHSNDHPGHDNLWAKLITFQAYLELNKIRHLIFDTGNYYENVPNLDQPGMKKKKLIEDCKGIYKFFTFCSNVWMYQQLTDKEKIKYVPWYKPKRNKPVGKILSPEELTIVHHNKHQVLKLMNYLVEQGAVRTP
Ga0209535_10064654F080233N/AMFYIWHTLIIATFIAVAYHLGYQHGAKKIKVTQSTRKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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