NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1011897

Scaffold Ga0209535_1011897


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1011897 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4831
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002318Metagenome / Metatranscriptome571Y
F006528Metagenome / Metatranscriptome371Y
F016274Metagenome248Y
F047918Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10118972F006528N/AMKEKDKLSTKLNIEKLAIQTFKNIIEGSRSINGVTWNKIKNLKRKDKIKYEYKYRSNAI
Ga0209535_10118973F016274GAGMTRNKFGLPLVYDFNIASRDKRRIRNLEYMRWNCPKDWKELWSKKLDQLKKNINERKRQTLN
Ga0209535_10118975F002318AGGAGMKAKDYKSITNILESQNKGKKFYDFMDMEDVEFRIKEDIVFLPKQYFNNIVKLIKGEK
Ga0209535_10118977F047918N/AMFNESRKETKNMITIKKIQGAFKTSYTLIDDATGLNVGLAKGKNWLIKRQAWNLCNNKDYLTNHKNTGHYNKITKCWFFDNDIENFMQDANKNIEIDTTLRLNNNQ
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