NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1015318

Scaffold Ga0209535_1015318


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1015318 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4082
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020815Metagenome222N
F028349Metagenome / Metatranscriptome192Y
F067202Metagenome126Y
F067210Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_101531810F067202AGGAGGMQYKDIVISDHDLECLHNRHIRMAIEEHILDLGLATTETLTGFTWRIDVRMRTDNAS
Ga0209535_101531811F028349GAGGMQVRTYHKKGKAVQFLGYSDIDASNAAKVVMGEVGDVGYFKPRLGTDEWIYDWIYKKEITDEDLQRALGK
Ga0209535_101531813F020815AGGAGGMRLYMNKQGEWVGTQAEAKKIDASMVDVPVDKPNLLKWLNTFTGAIDVAAKEVMQDKPKTRTVTQKAHAWETIRECAQKASIDDMTVALAILMDRVQDIADKQK
Ga0209535_10153184F067210AGGAGGMAYKNEISAYNAQYGGLRGAKILEFYMEQCDYNPEEFWPTFRMQKGKDVFKFILSQDPEGNGSGFAFIEDV
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