NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1016575

Scaffold Ga0209535_1016575


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1016575 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3867
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10165755F035273AGGMQNKHSFKVWNEQGKYMTRYTTEEVYKITVNYPHTHRTLEFIGMDRGSCIMQAEVAKEEADTVMLMISEDTVKLLNKEKMEI
Ga0209535_10165756F046983AGGAGMKLPEYMTKESTHTTIGVNTMSLIGLSLMWGHMTDMISLWFIPLTILTLLAGFGNEVRKR
Ga0209535_10165757F085562GAGMDEFTRKSTQHMDQKLVKQAIKAIDKSPELKKIRSIKDGMAYSEINSGVNDQQYKDNYDKITWNKDKPKPKFKVRVNGKVINDEEE
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Institute for Fundamental Biomedical Research
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