NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1017234

Scaffold Ga0209535_1017234


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1017234 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3770
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F017488Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10172345F015477N/AMEIAKAKNELRCAEGDVAKANNRIAFCLSAIHNLNNRDIKE
Ga0209535_10172349F017488GAGGMAFITNGAGDVISFAEYTDVVQKDQRIFESNNLKIPAESGFNTIQEFIEDQLEKSTQRILLKLKASTWWTNYLSYVGQGVTNPNVIPNVNPNLIDPGNALGRRQQFTDMCVYYNFAQYLFPLIAEFGNDESPEVQKIQYYDAKFNDIFNELISIADWYDADGDGTVEADEQAVSYMRTRRSRSRRSVVPVR
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