NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1026107

Scaffold Ga0209535_1026107


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1026107 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2845
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004368Metagenome / Metatranscriptome441Y
F006271Metagenome / Metatranscriptome377Y
F054419Metagenome / Metatranscriptome140N
F071648Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_102610711F006271N/AMLIYGNTPRDIMKMMWRRRIKMLSIIVVIAVAVMLMGCTIGNKKISPPLTALDKFWDTLGSGKTKDLVEETK
Ga0209535_10261076F071648GGAGGMKRTFACTVCGKKFVHNKSETLVGKLGIIPVNLCKTHFKAVMKHDELLLNDHRKVA
Ga0209535_10261078F004368AGGAGGMTGTRLLDIVMDRNEDFLYEDSRAMKLTPYVMSERCIQAEVVKIFKDKEEGNHDTLTYILEGGFKGFHNMDSSELIEEYKQIEEQWYNLYECSELPFTPYEEDPIHKLEEEKI
Ga0209535_10261079F054419AGGAGMSVGYGFGMLAVGMIAILIGAIIIYKIINKREEDNDD
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