NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1028162

Scaffold Ga0209535_1028162


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1028162 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2698
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004688Metagenome / Metatranscriptome428Y
F016342Metagenome / Metatranscriptome248Y
F037476Metagenome / Metatranscriptome168Y
F049999Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10281622F049999AGGMPSNICITSTMERSRCQMKIKNYLVIMEEVNRLQFEVEASSEAEAIELVYFGEAGDPTDQKVMEFNCLSVKEYIIK
Ga0209535_10281623F004688N/AMPLIHMNGSGEDRLRRQYNDLFCAVSDAQVKLLYDTDFHERDYYPLGNEAWDKAYQEREEVKEAMTKVYQYAKQHMHYLDYGKEPLPDED
Ga0209535_10281624F037476N/AMNNETPTVKLTGVFPKTFRVTKCESGRNDCNFEYSDEKKQVFFEVCLHGAYELHEHFTDLGYTELAPKVEFPTWHPNYKKS
Ga0209535_10281625F016342N/AMLNMFNNLQNKMKSKDYHALKDEFLRKSVENKEIIKQSSQGNFGMYDVLPANIARTVSEACDEFFKSRNIRYGSAWFHDRNDRKKKIQQAKDEQRNTNS
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