Scaffold Ga0209434_1002406

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209434_1002406

Scaffold Ga0209434_1002406

Overview

Basic Information
Taxon OID	3300025122 Open in IMG/M
Scaffold ID	Ga0209434_1002406 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8242
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)	300
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070004	Metagenome	123	Y
F087038	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100240618	F087038	GAG	MIKLNQGDLLIEKDGSHAVLMKRVDSLGVRAWRVYWNNGMEDLFPWLETSIQEQVHKGNLKYIKGGY
Ga0209434_10024068	F070004	GAG	MNDPNYFDVNSFVDSLDDVMDFGVFGDVGSLDFASVGIDSNENDEADNEESE

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