NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209434_1115337

Scaffold Ga0209434_1115337


Overview

Basic Information
Taxon OID3300025122 Open in IMG/M
Scaffold IDGa0209434_1115337 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003161Metagenome504N
F007893Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0209434_11153371F003161GAGGLSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLAGNCTDSTVGSATVATLDMGGALYRTATIPFDIQLYEE
Ga0209434_11153372F007893N/AVMQGIINRGLSDIATLEGANKVKDQLYGPPASQYWKSKPADRHGAHTRDLKRRVAASQPSDNLAVFNAGGVHYAPKIEAMYHMFENATKAIERDKAALYHKYIGGALIEAFD
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