NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1000323

Scaffold Ga0209644_1000323


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1000323 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9466
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006483Metagenome / Metatranscriptome372Y
F024125Metagenome / Metatranscriptome207N
F047724Metagenome149N
F057669Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_100032310F047724N/AVSEENINYYRQVFSKDDWAIGLESDDNEYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEARFEQAVLEICRTRVLQDIGADKLKGQKGGADVLAYDWREKFMGKIKDETFYTAKMRAIDTTTHAQLQISAENLTDWDSVKA
Ga0209644_100032312F006483N/AMGRYIHENCTYTENHAEGTYTFTGPCVKTKKPYSVTIPGHELWDLNQGEPIMCLKSLDAGEREFVMTGLSPEGWDEVFA
Ga0209644_10003232F024125AGGMILEVMKEKIYERTLDRFTGKVLTCDQCNAEDSKENEVREWGNPYDWGTICEDCDRHET
Ga0209644_10003236F057669GGAMENSKTSITPSEHWNGFTFSFSNGWSVSIQQGKDHYCERGKTAEVAIFDDEDNWYAFSEVKGHIFKSEEDTYVNGWLDADAIAKIISIISQKKVDIQTSE
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Institute for Fundamental Biomedical Research
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