NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1000400

Scaffold Ga0209644_1000400


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1000400 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8248
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000874Metagenome / Metatranscriptome851Y
F001081Metagenome / Metatranscriptome784Y
F004818Metagenome422Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_100040015F000874N/AMKIIMILATGTLLTFPIVEGVDPDCFSQGYSIVKKLATYHGPGPDQGWVLNDSNIEVGGWYCR
Ga0209644_100040018F004818GAGMKGGKMENNIVKRFISWRIRGLFVAEKRLKSLLKADTKPGASDKELDGLYKIISIQLKAISDMQNEIITLQLIDDENKK
Ga0209644_10004007F001081N/AMENFTSEKDMKDLMIPIKHAKICDNCHGNGFLNVVDNQNLTQVKQCWVCESNGEIKNYDQAEVDDFIYDTYYRKRLH
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