NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1000602

Scaffold Ga0209644_1000602


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1000602 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6659
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000567Metagenome / Metatranscriptome1020Y
F000874Metagenome / Metatranscriptome851Y
F018195Metagenome236Y
F021553Metagenome / Metatranscriptome218Y
F042381Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_100060215F021553AGGAMSDSVKYKTVSLKAEVYSKLEEISKLMTKGVKLSIPQTIELLLKQEEGNQELKAGWGK
Ga0209644_100060216F042381GGTGGMLKSQELEKVMRMFNDKSTVAKEARVSIELPDKSLWDVGEIFLAANKIIGSRETHRIVIRINKEIASPGSLLWKL
Ga0209644_10006022F000567GGAGMKENLLKLTQKITTWHESMFRYLTRKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGL
Ga0209644_10006025F000874GAGMKIIMILATGALLTFPTMEDIKPDCSSQGYAILEKLATYHGPGPNQGWVLNDSNLQVGGWYCE
Ga0209644_10006028F018195GAGGMSYKAICDNCSGNGHINIVDAKGKTQVKQCWMCESEGEIKYEEDFINKLIRNHHHRLQ
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