NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1001056

Scaffold Ga0209644_1001056


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1001056 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5081
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000904Metagenome / Metatranscriptome843Y
F001081Metagenome / Metatranscriptome784Y
F027200Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_100105612F001081N/AMKELIAPPKHKKICDNCHGNGYLNVVDNQNLTQVKQCWICESEGELKNYDQAEVDDFIYNTYYRKRLQ
Ga0209644_100105616F027200AGGMGNLFTNEKETKRAIKAAVDQYEIHRRYTLVKHKRSRKNRAQNKRAKLRGNS
Ga0209644_10010567F000904GGAGMDDHTKIYDEFFEHAMHLLNDHQKPVELVAGTMIAIAQRLYKTQLNEKEYEEMMEVIKDAPVKPYNIKKERLH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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