NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1001085

Scaffold Ga0209644_1001085


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1001085 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5013
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001081Metagenome / Metatranscriptome784Y
F002453Metagenome / Metatranscriptome558Y
F003292Metagenome / Metatranscriptome495Y
F040139Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_100108513F003292AGGAGMKYLISCIIIGLLFLLSVGCNGVKHVISIEEPTDHTQGDDGGKLKYKIIFGDVNQKE
Ga0209644_100108516F040139GAGMSIDAKKTCNTHTKEKEKSGTCCQVGDVKENAEQLTYEHHADVGPAAKEQNE
Ga0209644_10010853F001081AGGAMKGLMVPTKHTKICDNCHGNGYLNVVDNQNLTQVKQCWVCESEGEIKNYDQVEVDDFIYDFYHRKRLQ
Ga0209644_10010856F002453GGAMAPREYPTVYNSWYECSRDAHIESAKVLSKMGYKNVNDYKVGTKYHCKLVDTT
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