Scaffold Ga0209644_1001904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209644_1001904

Scaffold Ga0209644_1001904

Overview

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1001904 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3942
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001494	Metagenome	683	Y
F002743	Metagenome / Metatranscriptome	533	Y
F015479	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10019041	F002743	GGA	MKDEDKIYHDLLDHVLHLLEHKLPVEMVAAALMAIAQRLYKTHLSPEDYQRIMKIAYETNVE
Ga0209644_100190411	F001494	N/A	MKGKINMQKRKKKDPVKEFQKQCVDQRIDLFYVADRVRGILECKTDAKLRDELAEFKDECVHNIGTNALIERYEY
Ga0209644_10019048	F015479	N/A	MKILIILGTSAILTFPMDKSIKPDCFSQGHAILQKLATYQGPGPEQGWYLNGTKIQVAGFYCD

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