NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1007432

Scaffold Ga0209644_1007432


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1007432 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2233
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F004879Metagenome / Metatranscriptome420Y
F039829Metagenome / Metatranscriptome163Y
F049689Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10074322F002330N/AMIIFDIMLKQIKQINKTLKIGDKFTIYYAPAFTKNGEDQTTIYEPHQYEVNVRSAIWTKDCKINRTGSLTYFDVKKNAYRTAIQTLQSIRIYLNKTMYVWKEGK
Ga0209644_10074323F049689AGGMENDQYFVIRVWYFDYKDTDKYQYSIVSDRAYPMPKAIDIKMAQDIMETNPNISYQIQKVNLMDIGKSKIAS
Ga0209644_10074324F039829AGAAGMSLRVKDVIRELKKFPDNYKVSLETYEEDKNNDGGWKKTNCISIHKDEDAENFVVIK
Ga0209644_10074325F004879GGAGMSKNNEMQLWKRDHFESKIDKLLEPEIEREELKIKTTINKILDKGIKSFSKSIGADKVIARLEKAEEEKKEASRLAYTFFNNKASSIVSYHKAKEYKFDRDEKNSISVKDCISQLEKWAEKQAEQFAETTEQGKRLNFLKTLRDSCKDKVKEATVSDELKATLDNLMKMVGVSWERKLPALPKPKK
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Biomedical Sciences Research Center "Alexander Fleming"
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