Scaffold Ga0209644_1009461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209644_1009461

Scaffold Ga0209644_1009461

Overview

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1009461 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2015
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005749	Metagenome	391	Y
F037260	Metagenome	168	Y
F041256	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10094611	F037260	N/A	MAKKKKKDIPFHISHNYKQWTSDQGYSFWAKDEEDAKLYLEKTEGNLGSLKE
Ga0209644_10094613	F005749	GAGG	MKKSWLLIMSFDEHDGSPNEIKTLYHGKTKRSMTKHMNLLQDMNEHLVLALVEIDKKSTYDDIIKNDDSDMFFMDSKTNWNNGKTYEDLKEEALEEMLMGSLIKGEMGFA
Ga0209644_10094615	F041256	GAG	MNLNEYLIENDRYIGDVELLFSVGSALDKVSGDTFPMLAGGAIGFDEPMNLMDMDISYDSEEWYNSLANSDREVVDEVMDNLSYEEWVESHIGEPEYLGSR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.