NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1009872

Scaffold Ga0209644_1009872


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1009872 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001606Metagenome664N
F049554Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10098722F001606GAGGMTYGYDDVTTTSLGTAVAETQLNSGTSLSAPDPAHAFLACIPYQSESAAFTVDESLLTAFRIQSDDVAIEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGPNDVESFYTRPTNETAGATAANTRTEGGSMTIQGGNEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT
Ga0209644_10098723F049554AGGTGGMPHVNGEIEPSKVKSVSVYNVGDYGVDNFLPFTDVGLTETSITFSTAVLTRDTEDSNQPMDDFPAVYSDTDTGILLNEGNDSAFSQTYSYNPDMTAIVYALHLHFPAAVICSAFTSGTLNVGALHLKI
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