NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000118

Scaffold Ga0209348_1000118


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000118 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50627
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (13.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F011658Metagenome / Metatranscriptome288Y
F014834Metagenome / Metatranscriptome259Y
F048927Metagenome147Y
F050307Metagenome145Y
F082545Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100011839F050307N/ALQTLIPKNYMNKDLKKRIKEFNKIKYPNDNSKRIIIASLKPAVTAAPKNK
Ga0209348_100011845F011658N/AMKTLWQQLKPEIKQSLKDQQDKYPSMVEGVKISLKENYFWSHLTIGQARDIVYFTDLTLASLSSYDWSYGEKFLVCED
Ga0209348_100011848F005491N/AMSTFYKDTRYNGKLVRLEDVVDETYQRALKTIDDSFYELIGTSESNPDEFYEDYHEAFELVIEELKQFIYNK
Ga0209348_100011849F004523N/AMEYLSTEIKSAREAMTVFKILGIKDVTTDRQRKNGTQVFELPIQQMYQSLIPKPLRFATYKAGYVRNISEYNSSPYQINKTKVRPAGNGYHYKGVERILIPSWEDRLIYLAKFIIKNYYKKPTYLINDYVIKCLKEAYLRDYNNQPSNRLPFGDIVHPDSSPVDDIKVIINGHRYNLS
Ga0209348_100011850F014834N/AMKDTNEIEKQLQRKADKYIEEKAQEMFNIYQEINKYVGTSQNFYDYITHYNQYKDARPEDKREHVSYVEPRQVKKKFELELAMNYKQRLVAKYTKELIAKLDIFE
Ga0209348_100011851F082545N/AMDFTYVTVLDFASGKVYQYNLADVGDNYLFEDKDEPQVEEVEQLLIDQGHELDDSEWMIHADPTINKIKL
Ga0209348_100011860F048927N/AMKTIKKSPSTNIIKLNNQTYIPFQLHQLPDYYQEIKLVDQFKLKGYIYINESSLKSYNKDIHTLNRDLNYKLSR

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