NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000133

Scaffold Ga0209348_1000133


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000133 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45375
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (88.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039881Metagenome163N
F047994Metagenome149Y
F061371Metagenome132Y
F063188Metagenome130N
F067818Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100013310F047994AGGAGLSHQINDQIFDTINDEWTDMSVEDLKDWLATHRETDMVAKVVHDNLDSLEKKWKQEKFDSYPDRW
Ga0209348_100013314F061371GGAGMNTLANIDTTIDAIKEVSSNALLKHGYSRSRQRLFDLSKELDQAWQNYKGISEQGYYKELVLFVIQRSTNGLRYNTIARRSGLKKVLVHDSLTQLLKEQLIYKKLVDHNNFRKGNFILYCAKK
Ga0209348_100013339F067818AGGAGMKKLAAQALAFQYQLQIENAQAVLNNNNAALNMVDQALHDVITANEKLKTLNNMMQSAIKEVQSEEKEEKRS
Ga0209348_10001335F039881GGAGMARPNKLFKETMSYNLTIEKKDYEELKNFSTKESNTFNMQVSIADLIRTSVKLYIEDLRREYERKERDKD
Ga0209348_10001336F063188AGGAMKEKKETKTDITQRSDGMWIVDAKLSAVRIGLQDKEFVKRGHNLDYRLWITCFVAKTKKACVDWQKNNMDYLDRLSQKYSVNVKQYKQSIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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