NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000187

Scaffold Ga0209348_1000187


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000187 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36314
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006699Metagenome / Metatranscriptome366Y
F022184Metagenome / Metatranscriptome215Y
F058811Metagenome / Metatranscriptome134Y
F074590Metagenome / Metatranscriptome119Y
F082382Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100018715F022184GAGGMWTIYGLITIALQPGIIQIIEQKEFDNPQDCFKEAMVIMQDSEDRRGMVCVPIPEDKKTG
Ga0209348_100018730F074590GGAGMSVSIKFWHVFGLSWESVESQPVFGHQRGETADNACIYFFDGYIFNIPFFKIMIGEVYGLLED
Ga0209348_100018731F082382GGGGGMFRVYEVYCGDRFIGNYKDSSADGAIKQAYMKSGSASKYTGNAQHMYKAKEIGKLCGCGDEQ
Ga0209348_100018752F058811AGGAGMSETNKGVLVDPYTKTISNVQVGDYKDIKKHLQCSVFCSGGRDEGGDAIYVNDEGLYTETEFWYAPEIYPYPYAGRVLFLGIDAGGNSADSFLDAEDLEDIDAKFMSRDEVKVMVDLY
Ga0209348_10001876F006699GGAGMLRRYDFKCITCGYIEEQWVDSEDEFTTCLECGHTAQRIISSVSSHFKGTGWPGADDAWAKDHERAAKV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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