NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000361

Scaffold Ga0209348_1000361


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000361 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24805
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005018Metagenome / Metatranscriptome415Y
F026128Metagenome / Metatranscriptome199Y
F079330Metagenome116N
F090891Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100036124F090891AGGAMSDKVYLIKNGITVLTDNPNKFLADGWKHKHNNPEAKKPTGRKYGKKKKTPK
Ga0209348_100036135F005018AGGAGMAVTKEWVSAKPKTNADGNVTEWSVEYKYTDGDFSHTFSKSEKIEAPSKAPSGYSKSEILGLMDEAHWDDMFNKKHNVHKNPPAVDTVDNDFDINSLS
Ga0209348_100036144F079330GGAMKKVKVTLHQPLNIFTLVKSLLTITILEEVVAQYEVIDIYPSLERTHTLEKLIKANKDNVYASDVRLDCFYECTELEDRELLARDFSTKSHDLTIN
Ga0209348_10003618F026128GAGVKKIELPEFIRLSHYRIKLIKINSHICYEIGEQQGSFHSKQMIIYLDEDIIEEGGSIAVDLVKHEILHAIYYVRQLEGKNEEDTVNGMATHYTEIEKNNPDYVRWKLQNLN
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