NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1000534

Scaffold Ga0209348_1000534


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000534 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19598
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (55.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F009812Metagenome312Y
F011410Metagenome291Y
F046013Metagenome152Y
F052656Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10005343F003020GAGGMPDISKFKSVSVSTDTHAKLLGLAENRFEVPVSVQKVIEFLLEKELKKKNGRSNGKSRS
Ga0209348_100053439F046013AGGMDIHQIYIRDSEAAFENAIKKGHGHVKDTHMYMYTKYGNGKPYDVFKHIMTRRHETVEVEPDA
Ga0209348_100053440F052656N/ANSDIGKELSIVSEQTKTRLSQAMNNIKLDDKEPTVAVVASGGFSLVN
Ga0209348_10005347F011410AGCAGGMKDFKFKLEWYISDLLVWIVFTISIGLMIASIVTMYNMYNVIETMWLEIQQVKETNISLYQFIEGHRNDFD
Ga0209348_10005348F000720AGGMTLIKENRGVRKEIPDRMMSATFALPIDERRVVGILDYVASDTGVTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVIGQMANYLHKNMEDIILGKQPEKKQRMLSTDPYAMKE
Ga0209348_10005349F009812N/AMMDEFELEIDWIPEDTGAPYEADDVFPNTPPHTIDKICKSKFGHTNWARMGSMTPEELLGNPCEFDYEKGIIYFKNSSLI
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