NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1000568

Scaffold Ga0209348_1000568


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000568 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18984
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F019561Metagenome229Y
F050005Metagenome146Y
F051867Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100056811F050005AGGAGGMVNKKSSYPLFHEFKIMKIGNILFNTNVDDIIDEEIEETKVLLNQVKDINEIVEV
Ga0209348_100056813F010277GGAGGMSRLKDKLLEVELFVGEQIEDYTNEQVIEKVRKRFGSQMYVQYAEELLEEFRMELDLIRRFS
Ga0209348_100056817F019561AGGAGGMTDKFTKPILRNLRMTLQEVLDAECKTDKIPFKFTLGNCTFEEDQAKFQLIVTFKGTTPQDIQRKKEYEDLQQMAKFFDIDLLKKHPRYTLVGYKSKARTKPWIITDNQRSGEFIITDDQAKTLFGKKDVNEFIERQREAQSNA
Ga0209348_100056824F051867N/AMFKAMLLICSLVHAPGGERSCFELHDMEAPNGYTTQEKCMARIHEMADMVRTVVPFPYELKYKCENKTRRTNFD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.