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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025127 Open in IMG/M |
| Scaffold ID | Ga0209348_1000607 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18342 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (69.77%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006793 | Metagenome | 364 | Y |
| F038719 | Metagenome | 165 | Y |
| F071303 | Metagenome | 122 | N |
| F073646 | Metagenome | 120 | Y |
| F074765 | Metagenome | 119 | Y |
| F078604 | Metagenome | 116 | Y |
| F090494 | Metagenome | 108 | N |
| F099447 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209348_10006071 | F006793 | GAG | MTTNRSTNEQIQERVNFAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSAREAEGDYLFRNFSEVARKRKKYGDLDSLDNTTDSETP |
| Ga0209348_100060717 | F038719 | AGGAG | MDSKTREKILHRCEILRYMGDDGISCIFDELPDDQLMEDCGWVLDKAHDDLDNFQFGLTRKIINKAAARSANDMWS |
| Ga0209348_100060719 | F074765 | AGG | MTKTATPKQTKITVSKLSHRLSRNGWISYNCELRKGRTTLAAVDQEGVGGDERVDWNNTEHYLLIHHWILDTQRDFWREYEVENINYMVELGHKTMKDSIKEKLDLMKKFNLWEKLAKKKPKSWKEARTIQQQLDFHDDMVGAWTTVYVENKLADKYYD |
| Ga0209348_100060732 | F078604 | N/A | MSNDFYIISTNATIKSTPTKLDKAFKKELVTNNGDLKPHVEKIIDNVFYYGKQCINATIPTLFIEIEYKDSNKDIYLISKEVFLYSEDMPTLKDLENYKSKFDFNFSSQVEPEVYELVEAFHLGYGCMCLSSEGY |
| Ga0209348_100060733 | F090494 | AGG | MSTKHTETFKNFQTKHNLSYSNFFTFTNPKVLKNEKVSEIPTAILMLMNTPKACPAAGSCREVCLITSGNPIYLDNKIKCRIRRNNAFMSDYSIFLRYLVVNCFRHYAKHRGTDKVGFRLNGVSDYAWEDFSVKLTAEDTDYIKKAFNIYIEPIRYGSVIEAVQKAIDLNNNELLKNSVQFYDYSKRIDRDFKKIKALNYHITLSHGSKEDTFSKALELGLNYAAAFNLKKSQDLPKQFTYKGIKLNVIDGDITDYRPLDNNNKTNIVGLHFKIVVNKDNAKKLDFCIA |
| Ga0209348_100060736 | F071303 | N/A | MVKLVNLNRRLKTPADKAAFQGKNPSNKTTGPNTAGGLQDPWRGTLDNNPLNDDFYQSSYTFSGEAPEVQKKLDGLQFEYGNAFEEGNNEFAANFLSKYSRTLGGTDSAEDKGLIEEDRIVRPENLSQIATQPAASGNAIQDPNVAGKFPSQEVNV |
| Ga0209348_10006074 | F099447 | GGAGG | MPKKDADKIISHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQKAFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR |
| Ga0209348_10006075 | F073646 | AGGAGG | MLQSEYLELAIELYDIYLANNKHPKKWLPIVELEKCKRGPGFWAKLKKMKGLYSELKPVFVDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQKGRETSQEVTI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |