NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1000981

Scaffold Ga0209348_1000981


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000981 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14307
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F002721Metagenome / Metatranscriptome534Y
F079507Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100098111F001190AGGMSKKDQTQDNYFDIKRFQQLLDRLEGSKKRQQRQKSVEGRRDIFAGGLANMMSNF
Ga0209348_100098113F079507AGGMAVGTWSNPYGALGGGLPSTGDISMFSSKPFGGGNMFGAILGGGLSLAGSIFGARGQAAAAQAQMDASADQMKNNIMMAREARKGNLAKFIGQNVADYGYGADLDFDRQRRASIFDSTRKRDLERAGNIADFNAMIGMQDTPAFREQKQRAFRRDLEKARVERQAAMEGMFGPIRRSA
Ga0209348_100098118F002721N/AMKDSRLDLGRYITNPFNRRGEITKRLDFDDLFTSKAETGDYPFNPSRFESGDLTKKAMSQKLTQNPGLNFAPNTPFFDDNQEATSDYELFEGLGRFNRVMDYDFENGRPLTNQRPQDQPDYNPIWIEAYGMSPTLNPGDTAKNPMPRLRNPDPKGYIMRKAESRAESEVEDKRSVAQLLAQQGSPSKAAIKQGEKTEKIEQENT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.