NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1001032

Scaffold Ga0209348_1001032


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1001032 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13895
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F021207Metagenome220Y
F054940Metagenome139Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100103216F054940GAGMNLLRQEMKELVKERYYEYLEEGYEPFEAMELAKKDIEERAESDMGAYKRLYNSSFDID
Ga0209348_10010323F021207GGAGMSKRFKQVNIQQFAILVQEVDISKYTQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSTTKEEVMKLINEGRVTWNKDVI
Ga0209348_10010324F105326GGAGMEQRRNLTPKEHWELHQGLWYMLGCDMQLKYKDRTTAVYVDNKEKLKYTYSTKGFIKWFPIPKEDKI
Ga0209348_10010326F013187AGGAGMPTKKIKKKPRRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKDMQGG
Ga0209348_10010329F008925AGGAGMTTKSKPKIDTITLNLINKLKQIDDTINEGAWEYIHLGDILRLQDAFHTTINHFDLKKKGGIGEHGADEGKYTQFWHSDYVCHTDPEAYDPSKVEKDDE
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Institute for Fundamental Biomedical Research
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