NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1001137

Scaffold Ga0209348_1001137


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1001137 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13167
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023748Metagenome209Y
F024676Metagenome205Y
F054940Metagenome139Y
F095344Metagenome105Y
F095588Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100113715F054940GAGGMTNLLADEIKQLIKERYYEYLEEGYESFEAMELAKRDVHETKESEIDTYNEMYSSSFEVD
Ga0209348_100113717F024676N/AMLGIDYMKNVMYNKNNMRKDMYVIAMPYPNQIQLPDILEEEDGEVMYFKNKKDAKKFLQNLYDERNINIQALIDDNIEIMRVQ
Ga0209348_100113718F095588AGGAGMKYKVEIELDFDRRPNKKDVLHRLFDVMKEDKVNYKLHKYNNSLWSQVKRSIKNDKYK
Ga0209348_100113721F023748AGGAGMSEYKYTYRFSEQTVDTRYYKVESNAKLTQAEMQDLAWSVEQTEGETFKCNEGKATFEGTEYGDDAQYQMEEGEEDLADD
Ga0209348_100113722F095344N/AKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEQDDE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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