Basic Information | |
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Taxon OID | 3300025127 Open in IMG/M |
Scaffold ID | Ga0209348_1002571 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8469 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (38.46%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001993 | Metagenome / Metatranscriptome | 607 | Y |
F002185 | Metagenome / Metatranscriptome | 585 | Y |
F004453 | Metagenome | 437 | Y |
F005670 | Metagenome / Metatranscriptome | 393 | Y |
F014388 | Metagenome / Metatranscriptome | 263 | N |
F018197 | Metagenome | 236 | Y |
F049045 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209348_100257110 | F005670 | N/A | MKLLTRQEYNLILRSLDYYDTFMTQRDKEIREDLEDKLYYNLYNPKDGVAQTEVNLPALYDIKTEKDLSL |
Ga0209348_100257114 | F001993 | N/A | MNSEELRYKMKHLGVLCPNRSVANDEQFHELYSKFKDVIEDTEYNIDIVDCLTALHYAMEDFDMYE |
Ga0209348_100257116 | F014388 | AGGAG | MSSLHHEEILEDCFEVASESFRINNKLTHEQLHELITISKGTYDAICNNAYKLFQDRCI |
Ga0209348_100257117 | F004453 | N/A | MLIDFTEYELETIANAMEDYIQYDDEKLDTELLFGGLSVADRVTSINNKIDSVLYN |
Ga0209348_100257122 | F049045 | N/A | MLPIRLGGSLMTVSELKEYLSKFNDDEKITFYFLKDNVLTNCQLEDVNSYGMGIEFTIQDTSEYFEEAV |
Ga0209348_10025716 | F002185 | AGGAG | MVKGKLERKYRLIHNGRELSQGLLSEAGKYDAMQILVQRFDEGRPDAIDPDEVEVIDVTQEKK |
Ga0209348_10025719 | F018197 | N/A | MNNKLLEETNIKEWTNMPPISEELYNELVKEFNNERLYFFNDSYNLED |
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