NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1002706

Scaffold Ga0209348_1002706


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1002706 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8230
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F021207Metagenome220Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10027062F021207AGGAGMSKRFKQVNVQHFATLVQELKIDLLTQEEFVNAVEEIYMSIFRHNTNGDFVIPTMPNEEGNWKVHKPSATKEEVMELIKKGQIIWNKDVI
Ga0209348_10027063F105326AGGAMEQRRNLTPTQHWELHQGLWHMLGCDMQLKHKDKTTAIYVDNKARLKYTYSTKGFIKWFPIPKEDKI
Ga0209348_10027065F013187N/AMPTKKIKKKPRRNTWVYIYGDEMPEIWEHFGIDFPNPDDRMKLKFVNYETKEMQGG
Ga0209348_10027068F008925AGGAGMTKKAKPTIDAVTLNLINKLKAIDDTINEGAWEYIHLGDIIRLQDAFQEAINHYDLKKKGGIGEYGNDEGKYIQFYHSDYVCYTDPEAFDPSKVEEKNDE
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