NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1004063

Scaffold Ga0209348_1004063


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1004063 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6525
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023877Metagenome / Metatranscriptome208Y
F025520Metagenome201Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100406312F089953GGAGMEDLINEEILENIHEGYEIYKVTLDDNVEIVVKYAIRERSCFADQDLKLVRHNNMSFFPTLEDAEKALSEIVQKRFEEQAQ
Ga0209348_10040636F025520N/AMTFDDDFYIIRSTSYIKSVPTKLDKDFKKDLIDDNGDLKPHVEKIIENVFYYGKQCINATLPTCFIEIEYKTSNGHYLITREVFLYEEDYPTYADLVAYKEKLAYGFASQVTQETKDIVEAFHNGYGCECLSSGDY
Ga0209348_10040637F023877GGAGMTLKQLIKEYVDDHFKHFGFYPYEVEVDGQVYSYGTYWEILEDERFN
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