NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1005638

Scaffold Ga0209348_1005638


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1005638 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5388
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F070656Metagenome123N
F104989Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100563815F104989AGGAGGMSNKNLTPQEHWELHQGLWYMLGCDMQVYKQDSDRIIYIDKNSKWAYKYEKGFIDRKLQTNPDRRYL
Ga0209348_100563818F012581N/AMPKFTLYAKKVYYYRKEINARDRKTAEKRSDQYESERLFIPTGEEFYITSIEDNEDENN
Ga0209348_100563819F008925GAGGMKTTKPKIDAVTLNLINKLKAIDDTINEGAWEYIHLGDILRLQDAFQEAINHYDLKKKGGIGEYGNDEGKYIQFYHSDYVCHTDPEAFDPSKVEEEDE
Ga0209348_100563822F070656GAGGMSKKVLEAVREASISIACCLDEPSKITKKDLEHIQDQITKIENYLTPFYLEELEEIKKS
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