NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1007930

Scaffold Ga0209348_1007930


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1007930 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4389
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F021207Metagenome220Y
F023319Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100793010F013187AGGAGGMPTSAYKKKPKKPTWVWVYGDEMPEVWEHFGFTNPDPDDRIKLKFVKYESKEMQRG
Ga0209348_100793013F021207AGGAGMSKRFKQVNVQHFATLVQEIDVSKYTQKEYVEIVEELYMSIFRHNTSGDFVIETLPNEKGNWRVHKPSATKEEVMELIKKGQIIWDKNVI
Ga0209348_10079304F023319AGGAGMSKKIKCQRCKTNKAYPEDMENGACNLLLCDDCYTEIRYLLADYLGIHIQEIKI
Ga0209348_10079307F008925AGGAGMTTKTKPIIDPITLDLINKLKAIQDTVNEGAWEYVHIGDILRLQDVFHTAITHFDLKKKGGIGEYGDDKGKYTEFWHSDYVCHTDPEAYDPSKVEEDDE
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