NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1008568

Scaffold Ga0209348_1008568


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1008568 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4185
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024809Metagenome204Y
F036270Metagenome170Y
F038719Metagenome165Y
F062820Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100856813F038719AGGAGGMDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKAHDDLDQYQFGVTKKIMNDASARQSNDMWG
Ga0209348_100856816F024809AGGAGGLNYSQKVLFDDWISRCPIEGVFVDEPVSEVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGISENFEKS
Ga0209348_10085685F062820AGGAGMTTSTWKHIDVGSLCVHCGRDTAFGHSDMLFVDRIPCDTDLLDDDGKPIGTKEGYACRECIYVDEDDFFHINNLID
Ga0209348_10085687F036270GGAGGMYIESTNKQGTFKGDEQGHKLLSLIDDMGWDYDRFSSSGQETYDKICTILATVEEDKDET
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.