NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1009736

Scaffold Ga0209348_1009736


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1009736 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3886
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001993Metagenome / Metatranscriptome607Y
F005670Metagenome / Metatranscriptome393Y
F014388Metagenome / Metatranscriptome263N
F018197Metagenome236Y
F023877Metagenome / Metatranscriptome208Y
F049045Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10097361F018197N/AMNTELPKETNIKEWTNMPPISEELYNELVKEFNNERLYFFNDSYNLED
Ga0209348_100973612F023877AGGAGGMTTKQLIQEYVSDHYNTFGFYPYDVEVDGMIFSYGNYWAILNDERFD
Ga0209348_100973613F049045GGAGGMTVSELIETLLDYDGDEKITFYYLKDNVLTNCQIEDVNSYGMGIEFTIQDTSEYFEEAV
Ga0209348_10097362F005670N/AMKLLTRQEYNLILRSLDYYDTFMTKRDKEIREDLEDKLYYNLYNPKDGVAQTKVNLPALYDIKTEKDLSL
Ga0209348_10097365F001993N/AMNSEELRYKMKHLGVLCPNRSVANDEQFYELYSKFKDVIEDTEYNIDIVDCLTALHCAMEDFEMYE
Ga0209348_10097367F014388GGAGGMSSLHHENILEDCFEVSMESFRINNKLTHEQLDELITISKGTYDAICKNAYELFQDRCI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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