NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1011176

Scaffold Ga0209348_1011176


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1011176 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3585
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007401Metagenome352Y
F033764Metagenome176Y
F071754Metagenome122N
F073582Metagenome / Metatranscriptome120N
F100990Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10111761F073582N/AGFKLGNRLARAKINIMRASDSKSMGDEPMAEHYKEYAETWMNLAKNCGRRFTPPTAHSSRQPTIDLGDVELLDHKYSDKPEDEDGYQEVQVGGSGN
Ga0209348_10111764F007401AGGAGMDHQEILKQRDLLDAMLASRTNQYEKIECMKVMDSIYFKKQLPENVVLFPLQRIKRYVHRTTKEPNKKNL
Ga0209348_10111765F071754AGGAMYIELPKSPIRKIYKCGNCSNYHFKFFDPKHDRTYTPEEWEKIMIDGREALDKALRLVRDDPKFFG
Ga0209348_10111767F033764AGGAGMHIDKYVVNNIGTKWTNGKSKKDQLLGKLEGEDISFKNLVPLLQQWNESVNGEWADRSVHLLINVKEENER
Ga0209348_10111768F100990AGGAGMGKNYDYTHIFDGVYASVTEYTPLPMSEQLFWSRVGWLQQAMIRAENFEFRLLWFNKLQELMKLQP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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