NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1011277

Scaffold Ga0209348_1011277


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1011277 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3564
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F013187Metagenome273Y
F021207Metagenome220Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10112774F012581AGGAGVTKYTLYAKKVYYYRKDINAQDMKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESEDEL
Ga0209348_10112775F013187AGGAGGMPTKAYKKKPKKPTWVWVYGDEMPEVWEHFGFTNPDPDDRMKLKFIKYESKEMQRD
Ga0209348_10112776F105326AGGAMGQERNLTPTQHWEMHQGLWHMLGCDMQLKHKDKTTAIYVDNKARLKYTYSTKGFIKWFPMPKEDKDANKSL
Ga0209348_10112777F021207AGGAGMSKRFKQVNVQHFATLVQEIDISKYTQKEYVEIVEELYMGIFRHNTNGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVVWDKNVI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.