NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1012404

Scaffold Ga0209348_1012404


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1012404 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3357
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013187Metagenome273Y
F021207Metagenome220Y
F029779Metagenome187Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_101240410F029779AGGAGMNYEEKYKQLCEALVGIDATERYSHEEIVDYAYKLKDIEEKSYDSKKT
Ga0209348_10124044F021207AGGAGMSKRFKQVNVQHFAALVQEIDISKYTQKEYVEIVEELYMGIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI
Ga0209348_10124045F105326AGGAMGQERNLTPTQHWELHQGLWHMLGCDMQLKHKDKTTAIYVDNKARLKYTYSTKGFIKWFPIPKEDKI
Ga0209348_10124047F013187AGGAMTLQNGRRRKEMPTSAYKKKPKKPTWVWVYGDEMPEVWEHFGFTNPDPDDRIKLKFVKYESKEMKRG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.