NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1012485

Scaffold Ga0209348_1012485


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1012485 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3344
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F027835Metagenome / Metatranscriptome193N
F048249Metagenome148N
F055727Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_101248511F048249N/AMKMTSKKSDEMKTSIFNTRIIRKGSQVLYRGSWGRDAQTVAEVIAIEQTQGPNEKYGDEVDAVTLDDHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK
Ga0209348_101248512F018534N/AMALPTLTNVLTSWDKLIVTGMTPERSNSVMTVAPNGATVTIEYRHQVGHSSGECSTIAYLVAYDSNGNRVTVRNQTYGCFGDEEKQFHQWFAQKMATAFDMDARRQRDLSDGIDMILAS
Ga0209348_10124855F055727N/AMMYNHFLEFSVDEMVDAYTYFTLIHDYEGCRLVGAAFAQNTSIDFQNF
Ga0209348_10124858F027835N/AMKTQQHIDALYERRKTAGGFEQALIDAYLRADGGNTRILEEAFKGTRFDLTPKPKYNHGVETLRNAAYWSGHRDEYLNDDKTAYQLIDEYLKEQ
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