NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1016513

Scaffold Ga0209348_1016513


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1016513 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2834
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025520Metagenome201Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10165133F025520N/AMAIYDEFYVISSTSYIKNVPQTLCTEFLKELKNDDDTLKPHISDLETNLISYGFPAIKCTIPTCFIEIEYKTSDGHYLITHEVFLYEEDYPTYADLVAYKEKLAYGFGSQVTQETNDIIHAFHNGYGCMCLSSGDY
Ga0209348_10165139F089953GGAGMEDLINEQILENIHEGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMSFFPTLEDAEQALSEIVHQRFEEQAQ
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