NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1022543

Scaffold Ga0209348_1022543


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1022543 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2335
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005611Metagenome395Y
F006282Metagenome / Metatranscriptome377Y
F009753Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10225436F005611GAGGMKTYRIIAGETIYAVYETEVKAKNKEEAKKIALDTCVSDYESSDLSNSAGDFEIDEIEEVQE
Ga0209348_10225437F006282N/AMTENETLKNRLAELSKQNTLLADHLANMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKINYFKRD
Ga0209348_10225438F009753AGGMLKAIYFALHFAMLMLGTVIAIYIDLWLGLAIAITFGVKFFFMLPNNKEGF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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