NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1024027

Scaffold Ga0209348_1024027


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1024027 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2247
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013187Metagenome273Y
F021207Metagenome220Y
F029779Metagenome187Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_102402710F029779AGGAGGMTIKEKYYKEKYKEICEELVGEDATSRYSHQDILSYVYNLKNIEERFYDSQKT
Ga0209348_10240276F021207AGGAGMSKRFKQVYVQHFATLVQDIDISKYTQKEYVEIVEELYMSIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELIQKGKMVWDKNVI
Ga0209348_10240277F105326AGGAMGQERNLTPTQHWELHQGLWYMLGCDMELKQKNKNTVVYMNRKDNRYYSYSSLSGSIKEKRNAN
Ga0209348_10240278F013187AGGAGMPTSAYKKKPKKPTWAWIYGDEMPELWEHFGFPYPDPDDRIKVRFVKYESKEMQRG
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