NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1032131

Scaffold Ga0209348_1032131


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1032131 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1875
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013187Metagenome273Y
F021207Metagenome220Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10321312F021207AGGAVVTMSKRFKQVNVQHFATLVQEIDVSKYTQKEYVEIVEELYMSIFRHNTSGDFVIETLPNEKGNWKVHKPSATKEEVMELIKEGKVIWDKNVI
Ga0209348_10321313F105326AGGAMGQERNLTPTQHWELHQGLWHMLGCDMQLKYKDKTTAIYVDNKAKLKYTYSTKGFIKWFPIPKENKI
Ga0209348_10321315F013187AGGAGMPTKAKIKKKPKRNTWVWLYGDEMQEIWEHFGFTNPDPDDRIKLKFVKYESKEMQRG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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