NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1052132

Scaffold Ga0209348_1052132


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1052132 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023748Metagenome209Y
F095344Metagenome105Y
F095588Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10521321F095344N/AKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE
Ga0209348_10521323F023748GGAGGMSKEYKYTYRFSEQTVDTRYYKVESNAKLTQAEMQDLAWSVEQTEGETFTCNEGKATFEGTEYGDDAQYQMEEGEEDLADD
Ga0209348_10521325F095588AGGAGGMKYKVEIELDFNRRPSKKNVLDRLFDMLRDNKVNYKLHKYNNSLYEKVERSIKNDKHK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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