NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1066669

Scaffold Ga0209348_1066669


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1066669 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022458Metagenome / Metatranscriptome214Y
F030151Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10666692F030151AGGMLYFEATNIEELEVEAQKRAHEVSVAVIKSVIEALEKDVDKVVIGVLTSLDMDLSVERAGFLQSLETNLVRCEEAEEYELCKEAIKWIKKLRD
Ga0209348_10666693F022458N/AMIDDWLNQDPDDGFNPNDHGIEMDEIAKLYAMADMREDQEIWAREQANKFYHDFINLDITDATFAVNSLIKTKVLNINQVKTMLDNMIEIFERDEEYERCHVCNQIKKGLK

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